AAH45128 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH45128 T59473_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.833
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.833
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.714
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH45128 RRM 70 134
AAH45128 RRM 144 208

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.000
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.000
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.000
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.000
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.000
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.000
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.000
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.000
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.000
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.000
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.000
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.000
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.000
MDP0000217837 Malus x domestica MDP0000217837 N 0.000
MDP0000202971 Malus x domestica MDP0000202971 N 0.000
MDP0000176924 Malus x domestica MDP0000176924 N 0.000
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.000
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.000
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.000
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.000
mgf010445m Mimulus guttatus mgf010445m N 0.000
mgf003025m Mimulus guttatus mgf003025m N 0.000
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.000
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.000
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.000
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.000
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.000
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.000
ppa009199m Prunus persica ppa009199m N 0.000
ppa009316m Prunus persica ppa009316m N 0.000
27843.m000161 Ricinus communis 27843.m000161 N 0.000
27843.m000162 Ricinus communis 27843.m000162 N 0.000
SB04G006450 Sorghum bicolor Sb04g006450 N 0.000
SB06G032000 Sorghum bicolor Sb06g032000 N 0.000
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.000
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.000
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.000
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.000
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.000