PK02694.1 (Cannabis sativa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 PK02694.1 T01742_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK02694.1 CCCH ZF 58 84
PK02694.1 CCCH ZF 100 125
PK02694.1 CCCH ZF 144 170
PK02694.1 CCCH ZF 292 318
PK02694.1 CCCH ZF 337 363

Links

Other CCCH ZF family RBPs
Other Cannabis sativa RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000243257 Malus x domestica MDP0000243257 N 0.903
MDP0000804620 Malus x domestica MDP0000804620 N 0.903
MDP0000285251 Malus x domestica MDP0000285251 N 0.903
ppa005469m Prunus persica ppa005469m N 0.903
GSVIVG00030514001 Vitis vinifera GSVIVG00030514001 N 0.888
29620.m000559 Ricinus communis 29620.m000559 N 0.881
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.866
cassava11170.m1 Manihot esculenta cassava11170.m1 N 0.866
Glyma02g43510.1 Glycine max Glyma02g43510.1 N 0.851
Glyma14g05460.1 Glycine max Glyma14g05460.1 N 0.843
Cucsa.336220 Cucumis sativus Cucsa.336220 N 0.843
B9IAL1_POPTR Populus trichocarpa POPTR_0014s15770 N 0.828
Medtr5g092550 Medicago truncatula Medtr5g092550 N 0.828
chr2.LjT24P12.40.nd Lotus japonicus chr2.LjT24P12.40.nd N 0.828
mgf004255m Mimulus guttatus mgf004255m N 0.813
B9GTS9_POPTR Populus trichocarpa POPTR_0002s21790 N 0.813
XM_002892212.1 Arabidopsis lyrata Al_scaffold_0001_429 N 0.739
AT1G04990 Arabidopsis thaliana AT1G04990-TAIR-G N 0.731
XM_002881207.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001392 N 0.701