GSVIVG00030514001 (Vitis vinifera)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 GSVIVG00030514001 T03898_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00030514001 CCCH ZF 48 74
GSVIVT00030514001 CCCH ZF 91 116
GSVIVT00030514001 CCCH ZF 135 161
GSVIVT00030514001 CCCH ZF 285 311
GSVIVT00030514001 CCCH ZF 331 357

Links

Other CCCH ZF family RBPs
Other Vitis vinifera RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK02694.1 Cannabis sativa PK02694.1 N 0.888
ppa005469m Prunus persica ppa005469m N 0.881
MDP0000285251 Malus x domestica MDP0000285251 N 0.873
MDP0000804620 Malus x domestica MDP0000804620 N 0.866
MDP0000243257 Malus x domestica MDP0000243257 N 0.866
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.866
29620.m000559 Ricinus communis 29620.m000559 N 0.858
cassava11170.m1 Manihot esculenta cassava11170.m1 N 0.858
chr2.LjT24P12.40.nd Lotus japonicus chr2.LjT24P12.40.nd N 0.858
mgf004255m Mimulus guttatus mgf004255m N 0.851
Glyma14g05460.1 Glycine max Glyma14g05460.1 N 0.851
Glyma02g43510.1 Glycine max Glyma02g43510.1 N 0.851
B9IAL1_POPTR Populus trichocarpa POPTR_0014s15770 N 0.836
Medtr5g092550 Medicago truncatula Medtr5g092550 N 0.836
B9GTS9_POPTR Populus trichocarpa POPTR_0002s21790 N 0.828
Cucsa.336220 Cucumis sativus Cucsa.336220 N 0.821
XM_002892212.1 Arabidopsis lyrata Al_scaffold_0001_429 N 0.746
AT1G04990 Arabidopsis thaliana AT1G04990-TAIR-G N 0.739
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.724
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.701