MDP0000285251 (Malus x domestica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 MDP0000285251 T06359_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000285251 CCCH ZF 1094 1120
MDP0000285251 CCCH ZF 1137 1162
MDP0000285251 CCCH ZF 1181 1207
MDP0000285251 CCCH ZF 1322 1348
MDP0000285251 CCCH ZF 1365 1391

Links

Other CCCH ZF family RBPs
Other Malus x domestica RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000804620 Malus x domestica MDP0000804620 N 0.963
ppa005469m Prunus persica ppa005469m N 0.955
MDP0000243257 Malus x domestica MDP0000243257 N 0.955
PK02694.1 Cannabis sativa PK02694.1 N 0.903
cassava11170.m1 Manihot esculenta cassava11170.m1 N 0.888
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.888
29620.m000559 Ricinus communis 29620.m000559 N 0.888
GSVIVG00030514001 Vitis vinifera GSVIVG00030514001 N 0.873
B9IAL1_POPTR Populus trichocarpa POPTR_0014s15770 N 0.851
B9GTS9_POPTR Populus trichocarpa POPTR_0002s21790 N 0.836
Glyma14g05460.1 Glycine max Glyma14g05460.1 N 0.828
mgf004255m Mimulus guttatus mgf004255m N 0.828
chr2.LjT24P12.40.nd Lotus japonicus chr2.LjT24P12.40.nd N 0.828
Glyma02g43510.1 Glycine max Glyma02g43510.1 N 0.828
Cucsa.336220 Cucumis sativus Cucsa.336220 N 0.828
Medtr5g092550 Medicago truncatula Medtr5g092550 N 0.813
XM_002892212.1 Arabidopsis lyrata Al_scaffold_0001_429 N 0.739
AT1G04990 Arabidopsis thaliana AT1G04990-TAIR-G N 0.739
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.716
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.701
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.701