cassava11170.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava11170.m1 T04743_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava11170.m1 CCCH ZF 55 81
cassava11170.m1 CCCH ZF 97 122
cassava11170.m1 CCCH ZF 141 167
cassava11170.m1 CCCH ZF 291 317
cassava11170.m1 CCCH ZF 337 363

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.955
29620.m000559 Ricinus communis 29620.m000559 N 0.955
ppa005469m Prunus persica ppa005469m N 0.888
MDP0000285251 Malus x domestica MDP0000285251 N 0.888
B9IAL1_POPTR Populus trichocarpa POPTR_0014s15770 N 0.881
MDP0000243257 Malus x domestica MDP0000243257 N 0.881
MDP0000804620 Malus x domestica MDP0000804620 N 0.881
B9GTS9_POPTR Populus trichocarpa POPTR_0002s21790 N 0.866
PK02694.1 Cannabis sativa PK02694.1 N 0.866
GSVIVG00030514001 Vitis vinifera GSVIVG00030514001 N 0.858
Glyma02g43510.1 Glycine max Glyma02g43510.1 N 0.828
Glyma14g05460.1 Glycine max Glyma14g05460.1 N 0.828
mgf004255m Mimulus guttatus mgf004255m N 0.821
Medtr5g092550 Medicago truncatula Medtr5g092550 N 0.813
chr2.LjT24P12.40.nd Lotus japonicus chr2.LjT24P12.40.nd N 0.813
Cucsa.336220 Cucumis sativus Cucsa.336220 N 0.806
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.754
XM_002892212.1 Arabidopsis lyrata Al_scaffold_0001_429 N 0.746
AT1G04990 Arabidopsis thaliana AT1G04990-TAIR-G N 0.746
XM_002881207.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001392 N 0.716
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.701