Medtr5g092550 (Medicago truncatula)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Medtr5g092550 T05789_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr5g092550.1 CCCH ZF 48 74
Medtr5g092550.1 CCCH ZF 91 116
Medtr5g092550.1 CCCH ZF 135 161
Medtr5g092550.1 CCCH ZF 274 300
Medtr5g092550.1 CCCH ZF 318 344

Links

Other CCCH ZF family RBPs
Other Medicago truncatula RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr2.LjT24P12.40.nd Lotus japonicus chr2.LjT24P12.40.nd N 0.933
Glyma02g43510.1 Glycine max Glyma02g43510.1 N 0.925
Glyma14g05460.1 Glycine max Glyma14g05460.1 N 0.918
29620.m000559 Ricinus communis 29620.m000559 N 0.843
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.843
GSVIVG00030514001 Vitis vinifera GSVIVG00030514001 N 0.836
ppa005469m Prunus persica ppa005469m N 0.836
PK02694.1 Cannabis sativa PK02694.1 N 0.828
Cucsa.336220 Cucumis sativus Cucsa.336220 N 0.821
MDP0000804620 Malus x domestica MDP0000804620 N 0.821
MDP0000243257 Malus x domestica MDP0000243257 N 0.821
MDP0000285251 Malus x domestica MDP0000285251 N 0.813
cassava11170.m1 Manihot esculenta cassava11170.m1 N 0.813
B9IAL1_POPTR Populus trichocarpa POPTR_0014s15770 N 0.813
B9GTS9_POPTR Populus trichocarpa POPTR_0002s21790 N 0.806
mgf004255m Mimulus guttatus mgf004255m N 0.776
XM_002892212.1 Arabidopsis lyrata Al_scaffold_0001_429 N 0.769
AT1G04990 Arabidopsis thaliana AT1G04990-TAIR-G N 0.746
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.731
XM_002881207.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001392 N 0.716