mgf004255m (Mimulus guttatus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 mgf004255m T05615_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf004255m CCCH ZF 46 72
mgf004255m CCCH ZF 94 119
mgf004255m CCCH ZF 136 162
mgf004255m CCCH ZF 279 305
mgf004255m CCCH ZF 322 348

Links

Other CCCH ZF family RBPs
Other Mimulus guttatus RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00030514001 Vitis vinifera GSVIVG00030514001 N 0.851
29620.m000559 Ricinus communis 29620.m000559 N 0.836
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.836
MDP0000804620 Malus x domestica MDP0000804620 N 0.828
ppa005469m Prunus persica ppa005469m N 0.828
MDP0000285251 Malus x domestica MDP0000285251 N 0.828
MDP0000243257 Malus x domestica MDP0000243257 N 0.828
cassava11170.m1 Manihot esculenta cassava11170.m1 N 0.821
PK02694.1 Cannabis sativa PK02694.1 N 0.813
B9IAL1_POPTR Populus trichocarpa POPTR_0014s15770 N 0.799
chr2.LjT24P12.40.nd Lotus japonicus chr2.LjT24P12.40.nd N 0.799
B9GTS9_POPTR Populus trichocarpa POPTR_0002s21790 N 0.791
Glyma14g05460.1 Glycine max Glyma14g05460.1 N 0.784
Medtr5g092550 Medicago truncatula Medtr5g092550 N 0.776
Glyma02g43510.1 Glycine max Glyma02g43510.1 N 0.776
Cucsa.336220 Cucumis sativus Cucsa.336220 N 0.769
AT1G04990 Arabidopsis thaliana AT1G04990-TAIR-G N 0.709
XM_002892212.1 Arabidopsis lyrata Al_scaffold_0001_429 N 0.709