MDP0000804620 (Malus x domestica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 MDP0000804620 T06400_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000804620 CCCH ZF 75 101
MDP0000804620 CCCH ZF 118 143
MDP0000804620 CCCH ZF 162 188
MDP0000804620 CCCH ZF 303 329
MDP0000804620 CCCH ZF 346 372

Links

Other CCCH ZF family RBPs
Other Malus x domestica RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000243257 Malus x domestica MDP0000243257 N 0.993
ppa005469m Prunus persica ppa005469m N 0.970
MDP0000285251 Malus x domestica MDP0000285251 N 0.963
PK02694.1 Cannabis sativa PK02694.1 N 0.903
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.888
29620.m000559 Ricinus communis 29620.m000559 N 0.888
cassava11170.m1 Manihot esculenta cassava11170.m1 N 0.881
GSVIVG00030514001 Vitis vinifera GSVIVG00030514001 N 0.866
B9IAL1_POPTR Populus trichocarpa POPTR_0014s15770 N 0.843
chr2.LjT24P12.40.nd Lotus japonicus chr2.LjT24P12.40.nd N 0.836
Glyma02g43510.1 Glycine max Glyma02g43510.1 N 0.828
mgf004255m Mimulus guttatus mgf004255m N 0.828
Glyma14g05460.1 Glycine max Glyma14g05460.1 N 0.828
B9GTS9_POPTR Populus trichocarpa POPTR_0002s21790 N 0.828
Cucsa.336220 Cucumis sativus Cucsa.336220 N 0.821
Medtr5g092550 Medicago truncatula Medtr5g092550 N 0.821
XM_002892212.1 Arabidopsis lyrata Al_scaffold_0001_429 N 0.761
AT1G04990 Arabidopsis thaliana AT1G04990-TAIR-G N 0.761
XM_002881207.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001392 N 0.716
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.709