AT1G04990 (Arabidopsis thaliana)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 AT1G04990-TAIR-G T01876_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT1G04990.1-P CCCH ZF 48 74
AT1G04990.1-P CCCH ZF 92 117
AT1G04990.1-P CCCH ZF 136 162
AT1G04990.1-P CCCH ZF 262 287
AT1G04990.1-P CCCH ZF 308 334
AT1G04990.2-P CCCH ZF 48 74
AT1G04990.2-P CCCH ZF 92 117
AT1G04990.2-P CCCH ZF 136 162
AT1G04990.2-P CCCH ZF 262 287
AT1G04990.2-P CCCH ZF 308 334

Links

Other CCCH ZF family RBPs
Other Arabidopsis thaliana RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002892212.1 Arabidopsis lyrata Al_scaffold_0001_429 N 0.955
XM_002881207.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001392 N 0.851
ZFN2 Arabidopsis thaliana AT2G32930-TAIR-G N 0.799
chr2.LjT24P12.40.nd Lotus japonicus chr2.LjT24P12.40.nd N 0.769
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.761
Glyma14g05460.1 Glycine max Glyma14g05460.1 N 0.761
MDP0000804620 Malus x domestica MDP0000804620 N 0.761
MDP0000243257 Malus x domestica MDP0000243257 N 0.761
29620.m000559 Ricinus communis 29620.m000559 N 0.761
Glyma02g43510.1 Glycine max Glyma02g43510.1 N 0.754
cassava11170.m1 Manihot esculenta cassava11170.m1 N 0.746
Medtr5g092550 Medicago truncatula Medtr5g092550 N 0.746
MDP0000285251 Malus x domestica MDP0000285251 N 0.739
GSVIVG00030514001 Vitis vinifera GSVIVG00030514001 N 0.739
ppa005469m Prunus persica ppa005469m N 0.739
PK02694.1 Cannabis sativa PK02694.1 N 0.731
B9IAL1_POPTR Populus trichocarpa POPTR_0014s15770 N 0.716
B9GTS9_POPTR Populus trichocarpa POPTR_0002s21790 N 0.716
Cucsa.336220 Cucumis sativus Cucsa.336220 N 0.716
mgf004255m Mimulus guttatus mgf004255m N 0.709