XM_002892212.1 (Arabidopsis lyrata)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Al_scaffold_0001_429 T01872_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0001_429 CCCH ZF 48 74
Al_scaffold_0001_429 CCCH ZF 92 117
Al_scaffold_0001_429 CCCH ZF 136 162
Al_scaffold_0001_429 CCCH ZF 262 287
Al_scaffold_0001_429 CCCH ZF 308 334

Links

Other CCCH ZF family RBPs
Other Arabidopsis lyrata RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G04990 Arabidopsis thaliana AT1G04990-TAIR-G N 0.955
XM_002881207.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001392 N 0.851
ZFN2 Arabidopsis thaliana AT2G32930-TAIR-G N 0.799
Medtr5g092550 Medicago truncatula Medtr5g092550 N 0.769
Glyma14g05460.1 Glycine max Glyma14g05460.1 N 0.769
Glyma02g43510.1 Glycine max Glyma02g43510.1 N 0.761
MDP0000243257 Malus x domestica MDP0000243257 N 0.761
MDP0000804620 Malus x domestica MDP0000804620 N 0.761
chr2.LjT24P12.40.nd Lotus japonicus chr2.LjT24P12.40.nd N 0.761
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.761
29620.m000559 Ricinus communis 29620.m000559 N 0.761
GSVIVG00030514001 Vitis vinifera GSVIVG00030514001 N 0.746
cassava11170.m1 Manihot esculenta cassava11170.m1 N 0.746
ppa005469m Prunus persica ppa005469m N 0.739
PK02694.1 Cannabis sativa PK02694.1 N 0.739
MDP0000285251 Malus x domestica MDP0000285251 N 0.739
B9IAL1_POPTR Populus trichocarpa POPTR_0014s15770 N 0.724
B9GTS9_POPTR Populus trichocarpa POPTR_0002s21790 N 0.716
Cucsa.336220 Cucumis sativus Cucsa.336220 N 0.709
mgf004255m Mimulus guttatus mgf004255m N 0.709