Glyma14g05460.1 (Glycine max)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Glyma14g05460.1 T05445_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma14g05460.1 CCCH ZF 45 71
Glyma14g05460.1 CCCH ZF 88 113
Glyma14g05460.1 CCCH ZF 132 158
Glyma14g05460.1 CCCH ZF 272 298
Glyma14g05460.1 CCCH ZF 315 341

Links

Other CCCH ZF family RBPs
Other Glycine max RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma02g43510.1 Glycine max Glyma02g43510.1 N 0.978
chr2.LjT24P12.40.nd Lotus japonicus chr2.LjT24P12.40.nd N 0.918
Medtr5g092550 Medicago truncatula Medtr5g092550 N 0.918
GSVIVG00030514001 Vitis vinifera GSVIVG00030514001 N 0.851
PK02694.1 Cannabis sativa PK02694.1 N 0.843
ppa005469m Prunus persica ppa005469m N 0.843
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.836
29620.m000559 Ricinus communis 29620.m000559 N 0.836
MDP0000804620 Malus x domestica MDP0000804620 N 0.828
Cucsa.336220 Cucumis sativus Cucsa.336220 N 0.828
cassava11170.m1 Manihot esculenta cassava11170.m1 N 0.828
MDP0000243257 Malus x domestica MDP0000243257 N 0.828
MDP0000285251 Malus x domestica MDP0000285251 N 0.828
B9IAL1_POPTR Populus trichocarpa POPTR_0014s15770 N 0.821
B9GTS9_POPTR Populus trichocarpa POPTR_0002s21790 N 0.821
mgf004255m Mimulus guttatus mgf004255m N 0.784
XM_002892212.1 Arabidopsis lyrata Al_scaffold_0001_429 N 0.769
AT1G04990 Arabidopsis thaliana AT1G04990-TAIR-G N 0.761
XM_002881207.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001392 N 0.716
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.701