cassava35635.valid.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava35635.valid.m1 T04798_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava35635.valid.m1 CCCH ZF 55 81
cassava35635.valid.m1 CCCH ZF 97 122
cassava35635.valid.m1 CCCH ZF 141 167
cassava35635.valid.m1 CCCH ZF 291 317
cassava35635.valid.m1 CCCH ZF 337 363

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29620.m000559 Ricinus communis 29620.m000559 N 0.985
cassava11170.m1 Manihot esculenta cassava11170.m1 N 0.955
ppa005469m Prunus persica ppa005469m N 0.896
MDP0000243257 Malus x domestica MDP0000243257 N 0.888
B9IAL1_POPTR Populus trichocarpa POPTR_0014s15770 N 0.888
MDP0000804620 Malus x domestica MDP0000804620 N 0.888
MDP0000285251 Malus x domestica MDP0000285251 N 0.888
B9GTS9_POPTR Populus trichocarpa POPTR_0002s21790 N 0.873
GSVIVG00030514001 Vitis vinifera GSVIVG00030514001 N 0.866
PK02694.1 Cannabis sativa PK02694.1 N 0.866
Medtr5g092550 Medicago truncatula Medtr5g092550 N 0.843
Glyma14g05460.1 Glycine max Glyma14g05460.1 N 0.836
Glyma02g43510.1 Glycine max Glyma02g43510.1 N 0.836
chr2.LjT24P12.40.nd Lotus japonicus chr2.LjT24P12.40.nd N 0.836
mgf004255m Mimulus guttatus mgf004255m N 0.836
Cucsa.336220 Cucumis sativus Cucsa.336220 N 0.828
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.776
AT1G04990 Arabidopsis thaliana AT1G04990-TAIR-G N 0.761
XM_002892212.1 Arabidopsis lyrata Al_scaffold_0001_429 N 0.761
XM_002881207.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001392 N 0.716
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.716
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.709
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.701
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.701
SB05G013190 Sorghum bicolor Sb05g013190 N 0.701