CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B9IAL1_POPTR
(
Populus trichocarpa
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
POPTR_0014s15770
T04067_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0014s15770.1
CCCH ZF
50
76
PGAPDCGYYLRTGLCGYGSNCRFNHPV
POPTR_0014s15770.1
CCCH ZF
93
118
GQPDCGYYLKTGTCKYGSTCKYHHPR
POPTR_0014s15770.1
CCCH ZF
137
163
QDEKSCPYYMRTRSCKFGVACKFHHPQ
POPTR_0014s15770.1
CCCH ZF
287
313
PGQPECRHFMSTGTCKYGSDCKYHHPK
POPTR_0014s15770.1
CCCH ZF
333
359
PGQAVCPDYSMYGICKFGPTCRYDHPI
Links
Other
CCCH ZF
family RBPs
Other
Populus trichocarpa
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
B9GTS9_POPTR
Populus trichocarpa
POPTR_0002s21790
N
0.948
29620.m000559
Ricinus communis
29620.m000559
N
0.888
cassava35635.valid.m1
Manihot esculenta
cassava35635.valid.m1
N
0.888
cassava11170.m1
Manihot esculenta
cassava11170.m1
N
0.881
ppa005469m
Prunus persica
ppa005469m
N
0.858
MDP0000285251
Malus x domestica
MDP0000285251
N
0.851
MDP0000243257
Malus x domestica
MDP0000243257
N
0.843
MDP0000804620
Malus x domestica
MDP0000804620
N
0.843
GSVIVG00030514001
Vitis vinifera
GSVIVG00030514001
N
0.836
PK02694.1
Cannabis sativa
PK02694.1
N
0.828
Glyma14g05460.1
Glycine max
Glyma14g05460.1
N
0.821
Glyma02g43510.1
Glycine max
Glyma02g43510.1
N
0.821
chr2.LjT24P12.40.nd
Lotus japonicus
chr2.LjT24P12.40.nd
N
0.813
Medtr5g092550
Medicago truncatula
Medtr5g092550
N
0.813
mgf004255m
Mimulus guttatus
mgf004255m
N
0.799
Cucsa.336220
Cucumis sativus
Cucsa.336220
N
0.784
gw1.102.25.1
Physcomitrella patens
gw1.102.25.1
N
0.724
XM_002892212.1
Arabidopsis lyrata
Al_scaffold_0001_429
N
0.724
AT1G04990
Arabidopsis thaliana
AT1G04990-TAIR-G
N
0.716