B9GTS9_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0002s21790 T04015_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s21790.1 CCCH ZF 50 76
POPTR_0002s21790.1 CCCH ZF 93 118
POPTR_0002s21790.1 CCCH ZF 137 163
POPTR_0002s21790.1 CCCH ZF 286 312
POPTR_0002s21790.1 CCCH ZF 332 358

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9IAL1_POPTR Populus trichocarpa POPTR_0014s15770 N 0.948
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.873
29620.m000559 Ricinus communis 29620.m000559 N 0.873
cassava11170.m1 Manihot esculenta cassava11170.m1 N 0.866
ppa005469m Prunus persica ppa005469m N 0.843
MDP0000285251 Malus x domestica MDP0000285251 N 0.836
MDP0000243257 Malus x domestica MDP0000243257 N 0.828
GSVIVG00030514001 Vitis vinifera GSVIVG00030514001 N 0.828
MDP0000804620 Malus x domestica MDP0000804620 N 0.828
Glyma14g05460.1 Glycine max Glyma14g05460.1 N 0.821
Glyma02g43510.1 Glycine max Glyma02g43510.1 N 0.821
PK02694.1 Cannabis sativa PK02694.1 N 0.813
chr2.LjT24P12.40.nd Lotus japonicus chr2.LjT24P12.40.nd N 0.813
Medtr5g092550 Medicago truncatula Medtr5g092550 N 0.806
mgf004255m Mimulus guttatus mgf004255m N 0.791
Cucsa.336220 Cucumis sativus Cucsa.336220 N 0.769
AT1G04990 Arabidopsis thaliana AT1G04990-TAIR-G N 0.716
XM_002892212.1 Arabidopsis lyrata Al_scaffold_0001_429 N 0.716
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.716