ppa005469m (Prunus persica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ppa005469m T06515_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa005469m CCCH ZF 74 100
ppa005469m CCCH ZF 117 142
ppa005469m CCCH ZF 161 187
ppa005469m CCCH ZF 302 328
ppa005469m CCCH ZF 345 371

Links

Other CCCH ZF family RBPs
Other Prunus persica RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000804620 Malus x domestica MDP0000804620 N 0.970
MDP0000243257 Malus x domestica MDP0000243257 N 0.963
MDP0000285251 Malus x domestica MDP0000285251 N 0.955
PK02694.1 Cannabis sativa PK02694.1 N 0.903
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.896
29620.m000559 Ricinus communis 29620.m000559 N 0.896
cassava11170.m1 Manihot esculenta cassava11170.m1 N 0.888
GSVIVG00030514001 Vitis vinifera GSVIVG00030514001 N 0.881
B9IAL1_POPTR Populus trichocarpa POPTR_0014s15770 N 0.858
chr2.LjT24P12.40.nd Lotus japonicus chr2.LjT24P12.40.nd N 0.851
Glyma14g05460.1 Glycine max Glyma14g05460.1 N 0.843
Glyma02g43510.1 Glycine max Glyma02g43510.1 N 0.843
B9GTS9_POPTR Populus trichocarpa POPTR_0002s21790 N 0.843
Medtr5g092550 Medicago truncatula Medtr5g092550 N 0.836
mgf004255m Mimulus guttatus mgf004255m N 0.828
Cucsa.336220 Cucumis sativus Cucsa.336220 N 0.821
XM_002892212.1 Arabidopsis lyrata Al_scaffold_0001_429 N 0.739
AT1G04990 Arabidopsis thaliana AT1G04990-TAIR-G N 0.739
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.724