29620.m000559 (Ricinus communis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 29620.m000559 T04673_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29620.m000559 CCCH ZF 55 81
29620.m000559 CCCH ZF 98 123
29620.m000559 CCCH ZF 142 168
29620.m000559 CCCH ZF 292 318
29620.m000559 CCCH ZF 338 364

Links

Other CCCH ZF family RBPs
Other Ricinus communis RBPs

22 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.985
cassava11170.m1 Manihot esculenta cassava11170.m1 N 0.955
ppa005469m Prunus persica ppa005469m N 0.896
MDP0000804620 Malus x domestica MDP0000804620 N 0.888
B9IAL1_POPTR Populus trichocarpa POPTR_0014s15770 N 0.888
MDP0000243257 Malus x domestica MDP0000243257 N 0.888
MDP0000285251 Malus x domestica MDP0000285251 N 0.888
PK02694.1 Cannabis sativa PK02694.1 N 0.881
B9GTS9_POPTR Populus trichocarpa POPTR_0002s21790 N 0.873
GSVIVG00030514001 Vitis vinifera GSVIVG00030514001 N 0.858
Medtr5g092550 Medicago truncatula Medtr5g092550 N 0.843
Glyma02g43510.1 Glycine max Glyma02g43510.1 N 0.843
Glyma14g05460.1 Glycine max Glyma14g05460.1 N 0.836
chr2.LjT24P12.40.nd Lotus japonicus chr2.LjT24P12.40.nd N 0.836
mgf004255m Mimulus guttatus mgf004255m N 0.836
Cucsa.336220 Cucumis sativus Cucsa.336220 N 0.828
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.769
XM_002892212.1 Arabidopsis lyrata Al_scaffold_0001_429 N 0.761
AT1G04990 Arabidopsis thaliana AT1G04990-TAIR-G N 0.761
XM_002881207.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001392 N 0.731
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.709
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.701