mgf026218m (Mimulus guttatus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 mgf026218m T05649_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf026218m CCCH ZF 56 76
mgf026218m CCCH ZF 97 122
mgf026218m CCCH ZF 142 168
mgf026218m CCCH ZF 311 337
mgf026218m CCCH ZF 357 383

Links

Other CCCH ZF family RBPs
Other Mimulus guttatus RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf002685m Mimulus guttatus mgf002685m N 0.933
mgf008934m Mimulus guttatus mgf008934m N 0.800
29726.m004014 Ricinus communis 29726.m004014 N 0.791
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.778
ppa005056m Prunus persica ppa005056m N 0.776
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.769
PK29685.1 Cannabis sativa PK29685.1 N 0.761
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.754
MDP0000319251 Malus x domestica MDP0000319251 N 0.754
MDP0000535412 Malus x domestica MDP0000535412 N 0.746
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.733
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.731
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.731
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.724
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.716
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.704
ppa005229m Prunus persica ppa005229m N 0.701
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.701
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.701