CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pa_5_7490
(
Podospora anserina
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Pa_5_7490
T06448_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pa_5_7490
CCCH ZF
52
76
SHVPCKFFRQGACQAGNACPFSHDL
Pa_5_7490
CCCH ZF
81
104
ENVCKYFAKGNCKFGPKCANIHVL
Links
Other
CCCH ZF
family RBPs
Other
Podospora anserina
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gw1.28.197.1
Nectria haematococca
gw1.28.197.1
N
1.000
MGG_03480
Magnaporthe oryzae
MGG_03480
N
0.980
GLRG_01727
Colletotrichum graminicola
GLRG_01727
N
0.980
CHGG_00049
Chaetomium globosum
CHGG_00049
N
0.980
estExt_Genewise1.C_60695
Trichoderma atroviride
estExt_Genewise1.C_60695
N
0.960
estExt_Genewise1.C_110035
Neurospora tetrasperma
estExt_Genewise1.C_110035
N
0.959
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.959
estExt_Genewise1Plus.C_130028
Neurospora discreta
estExt_Genewise1Plus.C_130028
N
0.959
NCU05007
Neurospora crassa
NCU05007
N
0.959
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.959
estExt_fgenesh1_kg.C_60003
Myceliophthora thermophila
estExt_fgenesh1_kg.C_60003
N
0.940
estExt_fgenesh5_pg.C_100355
Trichoderma reesei
estExt_fgenesh5_pg.C_100355
N
0.940
e_gw1.29.29.1
Trichoderma virens
e_gw1.29.29.1
N
0.940
estExt_Genewise1.C_81229
Thielavia terrestris
estExt_Genewise1.C_81229
N
0.920
e_gw1.10.437.1
Cryphonectria parasitica
e_gw1.10.437.1
N
0.918
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.880
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.880
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.765
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.765
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.735
orf19.7385
Candida albicans
orf19.7385
N
0.735
ADR062W
Ashbya gossypii
ADR062W
N
0.725
SJAG_03191
Schizosaccharomyces japonicus
SJAG_03191
N
0.720
23616_YPL054W
Saccharomyces paradoxus
23616_YPL054W
N
0.720
LEE1
Saccharomyces cerevisiae
YPL054W
N
0.720
ACLA_033580
Aspergillus clavatus
CADACLAG00003610
N
0.712
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.706
SJAG_01535
Schizosaccharomyces japonicus
SJAG_01535
N
0.700
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.700
estExt_fgenesh1_pg.C_120231
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_120231
N
0.700
XP_002493509.1
Pichia pastoris
XP_002493509.1
N
0.700