CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FUBP1
(
Ochotona princeps
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSOPRG00000001175
T19242_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOPRP00000001100
KH
100
162
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL
ENSOPRP00000001100
KH
185
246
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQXXX
ENSOPRP00000001100
KH
275
337
XXXVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEII
ENSOPRP00000001100
KH
392
441
XXGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLI
Links
Other
KH
family RBPs
Other
Ochotona princeps
RBPs
71 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.891
FUBP1
Equus caballus
ENSECAG00000010867
I
0.891
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.891
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.891
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.891
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.891
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.891
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.891
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.891
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.891
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.891
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.891
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.891
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.891
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.891
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.891
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.888
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.888
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.888
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.888
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.888
FUBP1
Homo sapiens
ENSG00000162613
I
0.888
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.888
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.888
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.884
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.881
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.880
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.876
FUBP1
Taeniopygia guttata
ENSTGUG00000006841
I
0.871
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.841
FUBP1
Pteropus vampyrus
ENSPVAG00000014637
N
0.840
AAH70981
Xenopus laevis
AAH70981
I
0.829
AAI69815
Xenopus laevis
AAI69815
I
0.829
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.819
AAH44277
Xenopus laevis
AAH44277
I
0.818
AAN77161
Xenopus laevis
AAN77161
I
0.806
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.782
ENSGACG00000016563
Gasterosteus aculeatus
ENSGACG00000016563
I
0.780
ENSORLG00000003540
Oryzias latipes
ENSORLG00000003540
I
0.775
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.775
fubp1
Danio rerio
ENSDARG00000029248
I
0.767
FUBP1
Microcebus murinus
ENSMICG00000014463
N
0.736
FUBP3
Pteropus vampyrus
ENSPVAG00000001510
N
0.734
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.734
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.734
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.734
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.730
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.730
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.730
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.730
Ame_R003042
Ailuropoda melanoleuca
Ame_R003042
N
0.730
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.730
FUBP3
Homo sapiens
ENSG00000107164
N
0.730
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.726
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.726
FUBP3
Canis familiaris
ENSCAFG00000019942
N
0.726
A6QP83_BOVIN
Bos taurus
ENSBTAG00000013072
N
0.726
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.726
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.726
AAH60400
Xenopus laevis
AAH60400
N
0.726
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.722
FUBP3
Meleagris gallopavo
ENSMGAG00000005342
N
0.722
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
0.722
FUBP3
Felis catus
ENSFCAG00000005113
N
0.722
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.718
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.714
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.714
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.714
FUBP3
Oryzias latipes
ENSORLG00000017565
N
0.710
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.710
FUBP3
Procavia capensis
ENSPCAG00000001717
N
0.707