PK00513.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK00513.1 T31617_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK00513.1 RRM 2 70
PK00513.1 RRM 108 177

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000173934 Malus x domestica MDP0000173934 N 0.871
ppa005309m Prunus persica ppa005309m N 0.871
MDP0000217366 Malus x domestica MDP0000217366 N 0.856
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.849
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.842
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.842
Glyma20g34330.1 Glycine max Glyma20g34330.1 N 0.835
Glyma10g33320.1 Glycine max Glyma10g33320.1 N 0.835
B9HKT4_POPTR Populus trichocarpa POPTR_0008s17030 N 0.827
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.827
30008.m000830 Ricinus communis 30008.m000830 N 0.799
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.791
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.784
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.777
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.777
B9HSS5_POPTR Populus trichocarpa POPTR_0010s07790 N 0.770
AT4G14300 Arabidopsis thaliana AT4G14300-TAIR-G N 0.745
XM_002870277.1 Arabidopsis lyrata fgenesh2_kg.7__2913__AT4G14300.1 N 0.745
ppa005979m Prunus persica ppa005979m N 0.741
cassava12600.valid.m1 Manihot esculenta cassava12600.valid.m1 N 0.741
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.741
LOC_Os10g33230 Oryza sativa LOC_Os10g33230 N 0.741
cassava12599.valid.m1 Manihot esculenta cassava12599.valid.m1 N 0.741
cassava12598.valid.m1 Manihot esculenta cassava12598.valid.m1 N 0.741
cassava12601.valid.m1 Manihot esculenta cassava12601.valid.m1 N 0.741
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.734
BRADI3G28430 Brachypodium distachyon BRADI3G28430 N 0.734
B9IBE6_POPTR Populus trichocarpa POPTR_0014s18470 N 0.734
MDP0000320861 Malus x domestica MDP0000320861 N 0.719
MDP0000130865 Malus x domestica MDP0000130865 N 0.712
AT2G33410 Arabidopsis thaliana AT2G33410-TAIR-G N 0.709
XM_002879403.1 Arabidopsis lyrata fgenesh2_kg.4__1344__AT2G33410.1 N 0.709
MDP0000286430 Malus x domestica MDP0000286430 N 0.705