BGIOSIBCE035101 (Oryza indica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BGIOSIBCE035101 T33093_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE035101 RRM 240 265
BGIOSIBCE035101 RRM 271 315
BGIOSIBCE035101 RRM 360 430
BGIOSIBCE035101 RRM 528 564

Links

Other RRM family RBPs
Other Oryza indica RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.867
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.838
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.780
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.779
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.770
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.768
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.765
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.761
SB05G026740 Sorghum bicolor Sb05g026740 N 0.761
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.740
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.739
MDP0000306572 Malus x domestica MDP0000306572 N 0.732
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.728
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.728
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.728
MDP0000194332 Malus x domestica MDP0000194332 N 0.727
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.726
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.718
mgf004253m Mimulus guttatus mgf004253m N 0.716
mgf007385m Mimulus guttatus mgf007385m N 0.716
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.714
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.714
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.714
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.714
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.714
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.707
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.707
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.704
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.704
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.702
mgf010551m Mimulus guttatus mgf010551m N 0.702