XM_002866951.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.7__398__AT4G36690.1 T44592_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.7__398__AT4G36690.1 RRM 235 261
fgenesh2_kg.7__398__AT4G36690.1 RRM 266 310
fgenesh2_kg.7__398__AT4G36690.1 RRM 355 425
fgenesh2_kg.7__398__AT4G36690.1 RRM 489 551

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.985
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.893
MDP0000194332 Malus x domestica MDP0000194332 N 0.893
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.888
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.888
MDP0000306572 Malus x domestica MDP0000306572 N 0.888
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.883
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.883
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.874
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.874
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.874
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.874
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.874
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.869
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.869
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.864
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.851
mgf004253m Mimulus guttatus mgf004253m N 0.850
mgf007385m Mimulus guttatus mgf007385m N 0.850
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.850
mgf010551m Mimulus guttatus mgf010551m N 0.835
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.835
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.835
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.830
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.830
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.830
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.825
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.825
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.820
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.818
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.816
SB05G026740 Sorghum bicolor Sb05g026740 N 0.816
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.816
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.773
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.772
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.761
ppa006486m Prunus persica ppa006486m N 0.748
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.743
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.743
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.738
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.733
MDP0000288579 Malus x domestica MDP0000288579 N 0.728
chr6.LjT04E21.260.nc Lotus japonicus chr6.LjT04E21.260.nc N 0.728
e_gw1.98.112.1 Physcomitrella patens e_gw1.98.112.1 N 0.723
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.723
gw1.42.85.1 Selaginella moellendorfii gw1.42.85.1 N 0.709
BGIOSIBCE035101 Oryza indica BGIOSIBCE035101 N 0.704