XM_002888074.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.2__371__AT1G60900.1 T44508_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.2__371__AT1G60900.1 RRM 257 282
fgenesh2_kg.2__371__AT1G60900.1 RRM 288 332
fgenesh2_kg.2__371__AT1G60900.1 RRM 377 447
fgenesh2_kg.2__371__AT1G60900.1 RRM 511 573

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.995
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.898
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.898
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.898
MDP0000194332 Malus x domestica MDP0000194332 N 0.893
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.888
MDP0000306572 Malus x domestica MDP0000306572 N 0.883
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.883
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.878
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.874
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.874
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.874
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.874
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.874
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.870
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.869
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.864
mgf004253m Mimulus guttatus mgf004253m N 0.863
mgf007385m Mimulus guttatus mgf007385m N 0.863
mgf010551m Mimulus guttatus mgf010551m N 0.859
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.849
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.849
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.849
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.844
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.844
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.839
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.839
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.834
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.832
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.830
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.824
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.824
SB05G026740 Sorghum bicolor Sb05g026740 N 0.820
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.780
ppa006486m Prunus persica ppa006486m N 0.772
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.766
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.766
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.757
MDP0000288579 Malus x domestica MDP0000288579 N 0.756
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.752
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.752
chr6.LjT04E21.260.nc Lotus japonicus chr6.LjT04E21.260.nc N 0.751
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.749
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.741
mgf009246m Mimulus guttatus mgf009246m N 0.737
e_gw1.98.112.1 Physcomitrella patens e_gw1.98.112.1 N 0.733
gw1.42.85.1 Selaginella moellendorfii gw1.42.85.1 N 0.714
BGIOSIBCE035101 Oryza indica BGIOSIBCE035101 N 0.702