BGIOSIBCE008762 (Oryza indica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BGIOSIBCE008762 T32919_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE008762 RRM 216 241
BGIOSIBCE008762 RRM 247 291
BGIOSIBCE008762 RRM 336 406
BGIOSIBCE008762 RRM 472 532

Links

Other RRM family RBPs
Other Oryza indica RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.990
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.956
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.932
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.927
SB05G026740 Sorghum bicolor Sb05g026740 N 0.927
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.917
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.907
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.877
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.854
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.854
MDP0000194332 Malus x domestica MDP0000194332 N 0.849
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.849
MDP0000306572 Malus x domestica MDP0000306572 N 0.844
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.840
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.840
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.840
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.840
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.840
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.837
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.835
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.834
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.834
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.834
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.830
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.830
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.830
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.829
mgf007385m Mimulus guttatus mgf007385m N 0.828
mgf004253m Mimulus guttatus mgf004253m N 0.828
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.823
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.822
mgf010551m Mimulus guttatus mgf010551m N 0.820
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.811
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.808
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.807
BGIOSIBCE035101 Oryza indica BGIOSIBCE035101 N 0.768
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.752
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.749
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.748
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.741
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.741
ppa006486m Prunus persica ppa006486m N 0.733
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.722
MDP0000288579 Malus x domestica MDP0000288579 N 0.722
mgf009246m Mimulus guttatus mgf009246m N 0.712
e_gw1.98.112.1 Physcomitrella patens e_gw1.98.112.1 N 0.709