B9HEU4_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0007s12550 T45546_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0007s12550.1 RRM 231 257
POPTR_0007s12550.1 RRM 262 306
POPTR_0007s12550.1 RRM 351 421
POPTR_0007s12550.1 RRM 485 547

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.961
MDP0000306572 Malus x domestica MDP0000306572 N 0.922
MDP0000194332 Malus x domestica MDP0000194332 N 0.922
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.922
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.922
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.908
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.903
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.903
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.903
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.903
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.903
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.888
mgf007385m Mimulus guttatus mgf007385m N 0.888
mgf004253m Mimulus guttatus mgf004253m N 0.888
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.883
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.883
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.875
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.874
mgf010551m Mimulus guttatus mgf010551m N 0.869
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.864
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.858
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.854
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.854
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.854
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.850
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.849
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.840
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.840
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.830
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.830
SB05G026740 Sorghum bicolor Sb05g026740 N 0.830
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.830
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.820
ppa006486m Prunus persica ppa006486m N 0.791
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.786
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.780
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.777
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.777
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.777
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.773
MDP0000288579 Malus x domestica MDP0000288579 N 0.772
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.767
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.752
e_gw1.98.112.1 Physcomitrella patens e_gw1.98.112.1 N 0.743
chr6.LjT04E21.260.nc Lotus japonicus chr6.LjT04E21.260.nc N 0.738
mgf009246m Mimulus guttatus mgf009246m N 0.723
BGIOSIBCE035101 Oryza indica BGIOSIBCE035101 N 0.718
gw1.42.85.1 Selaginella moellendorfii gw1.42.85.1 N 0.714