Medtr4g032620 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr4g032620 T54505_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr4g032620.1 RRM 254 279
Medtr4g032620.1 RRM 285 329
Medtr4g032620.1 RRM 374 444
Medtr4g032620.1 RRM 508 570

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Medtr4g032540 Medicago truncatula Medtr4g032540 N 1.000
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.904
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.901
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.888
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.887
MDP0000306572 Malus x domestica MDP0000306572 N 0.874
MDP0000194332 Malus x domestica MDP0000194332 N 0.874
mgf010551m Mimulus guttatus mgf010551m N 0.873
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.869
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.869
mgf007385m Mimulus guttatus mgf007385m N 0.868
mgf004253m Mimulus guttatus mgf004253m N 0.868
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.864
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.859
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.859
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.859
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.859
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.859
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.859
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.854
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.849
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.844
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.844
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.834
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.834
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.830
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.829
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.829
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.829
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.829
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.825
SB05G026740 Sorghum bicolor Sb05g026740 N 0.824
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.820
ppa006486m Prunus persica ppa006486m N 0.772
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.771
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.761
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.761
MDP0000288579 Malus x domestica MDP0000288579 N 0.756
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.751
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.733
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.729
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.728
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.723
mgf009246m Mimulus guttatus mgf009246m N 0.722
chr6.LjT04E21.260.nc Lotus japonicus chr6.LjT04E21.260.nc N 0.717
e_gw1.98.112.1 Physcomitrella patens e_gw1.98.112.1 N 0.714
BGIOSIBCE035101 Oryza indica BGIOSIBCE035101 N 0.707