cassava35937.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava35937.valid.m1 T49336_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava35937.valid.m1 RRM 256 282
cassava35937.valid.m1 RRM 287 331
cassava35937.valid.m1 RRM 376 446
cassava35937.valid.m1 RRM 508 570

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 1.000
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.937
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.937
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.937
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.937
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.937
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.932
MDP0000306572 Malus x domestica MDP0000306572 N 0.922
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.922
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.922
MDP0000194332 Malus x domestica MDP0000194332 N 0.917
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.898
mgf007385m Mimulus guttatus mgf007385m N 0.893
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.893
mgf004253m Mimulus guttatus mgf004253m N 0.893
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.888
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.888
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.883
mgf010551m Mimulus guttatus mgf010551m N 0.883
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.882
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.880
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.873
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.869
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.869
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.869
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.859
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.859
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.859
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.854
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.850
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.840
SB05G026740 Sorghum bicolor Sb05g026740 N 0.835
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.830
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.796
ppa006486m Prunus persica ppa006486m N 0.791
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.786
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.785
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.783
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.777
MDP0000288579 Malus x domestica MDP0000288579 N 0.777
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.777
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.772
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.752
e_gw1.98.112.1 Physcomitrella patens e_gw1.98.112.1 N 0.748
gw1.42.85.1 Selaginella moellendorfii gw1.42.85.1 N 0.733
chr6.LjT04E21.260.nc Lotus japonicus chr6.LjT04E21.260.nc N 0.733
BGIOSIBCE035101 Oryza indica BGIOSIBCE035101 N 0.728
mgf009246m Mimulus guttatus mgf009246m N 0.728