BRADI4G09940 (Brachypodium distachyon)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BRADI4G09940 T33280_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI4G09940.1 RRM 206 231
BRADI4G09940.1 RRM 237 281
BRADI4G09940.1 RRM 326 396
BRADI4G09940.1 RRM 460 522

Links

Other RRM family RBPs
Other Brachypodium distachyon RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.966
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.956
SB05G026740 Sorghum bicolor Sb05g026740 N 0.937
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.932
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.927
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.912
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.902
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.863
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.859
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.859
MDP0000194332 Malus x domestica MDP0000194332 N 0.859
MDP0000306572 Malus x domestica MDP0000306572 N 0.859
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.854
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.854
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.854
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.850
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.850
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.850
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.850
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.850
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.850
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.850
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.844
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.839
mgf007385m Mimulus guttatus mgf007385m N 0.834
mgf004253m Mimulus guttatus mgf004253m N 0.834
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.829
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.829
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.827
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.824
mgf010551m Mimulus guttatus mgf010551m N 0.824
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.820
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.816
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.813
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.811
BGIOSIBCE035101 Oryza indica BGIOSIBCE035101 N 0.761
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.748
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.748
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.748
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.744
ppa006486m Prunus persica ppa006486m N 0.743
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.741
MDP0000288579 Malus x domestica MDP0000288579 N 0.732
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.727
e_gw1.98.112.1 Physcomitrella patens e_gw1.98.112.1 N 0.714
chr6.LjT04E21.260.nc Lotus japonicus chr6.LjT04E21.260.nc N 0.712
mgf009246m Mimulus guttatus mgf009246m N 0.707