MDP0000194332 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000194332 T57418_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000194332 RRM 299 325
MDP0000194332 RRM 330 374
MDP0000194332 RRM 419 489
MDP0000194332 RRM 556 617

Links

Other RRM family RBPs
Other Malus x domestica RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000306572 Malus x domestica MDP0000306572 N 0.985
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.932
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.927
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.922
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.917
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.917
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.899
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.898
mgf004253m Mimulus guttatus mgf004253m N 0.898
mgf007385m Mimulus guttatus mgf007385m N 0.898
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.893
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.893
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.893
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.893
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.893
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.893
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.893
mgf010551m Mimulus guttatus mgf010551m N 0.888
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.888
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.883
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.874
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.874
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.873
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.864
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.863
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.859
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.859
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.854
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.850
SB05G026740 Sorghum bicolor Sb05g026740 N 0.850
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.849
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.849
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.844
ppa006486m Prunus persica ppa006486m N 0.791
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.790
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.783
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.780
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.777
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.777
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.776
MDP0000288579 Malus x domestica MDP0000288579 N 0.772
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.767
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.756
chr6.LjT04E21.260.nc Lotus japonicus chr6.LjT04E21.260.nc N 0.738
e_gw1.98.112.1 Physcomitrella patens e_gw1.98.112.1 N 0.738
mgf009246m Mimulus guttatus mgf009246m N 0.738
BGIOSIBCE035101 Oryza indica BGIOSIBCE035101 N 0.727
gw1.42.85.1 Selaginella moellendorfii gw1.42.85.1 N 0.714