cassava40784.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava40784.m1 T49385_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava40784.m1 RRM 280 306
cassava40784.m1 RRM 311 355
cassava40784.m1 RRM 400 470
cassava40784.m1 RRM 532 594

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava40785.m1 Manihot esculenta cassava40785.m1 N 1.000
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 1.000
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 1.000
cassava40783.m1 Manihot esculenta cassava40783.m1 N 1.000
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.937
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.937
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.917
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.908
MDP0000306572 Malus x domestica MDP0000306572 N 0.903
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.903
MDP0000194332 Malus x domestica MDP0000194332 N 0.893
mgf007385m Mimulus guttatus mgf007385m N 0.888
mgf004253m Mimulus guttatus mgf004253m N 0.888
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.874
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.874
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.873
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.870
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.869
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.869
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.869
mgf010551m Mimulus guttatus mgf010551m N 0.864
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.859
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.859
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.855
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.854
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.854
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.850
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.845
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.845
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.840
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.835
SB05G026740 Sorghum bicolor Sb05g026740 N 0.825
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.820
ppa006486m Prunus persica ppa006486m N 0.791
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.789
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.786
MDP0000288579 Malus x domestica MDP0000288579 N 0.767
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.767
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.763
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.762
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.762
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.757
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.757
chr6.LjT04E21.260.nc Lotus japonicus chr6.LjT04E21.260.nc N 0.743
e_gw1.98.112.1 Physcomitrella patens e_gw1.98.112.1 N 0.728
mgf009246m Mimulus guttatus mgf009246m N 0.728
gw1.42.85.1 Selaginella moellendorfii gw1.42.85.1 N 0.714
BGIOSIBCE035101 Oryza indica BGIOSIBCE035101 N 0.714