B9MXR1_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0005s12700 T45514_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s12700.1 RRM 252 278
POPTR_0005s12700.1 RRM 283 327
POPTR_0005s12700.1 RRM 372 442
POPTR_0005s12700.1 RRM 510 572

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.961
MDP0000306572 Malus x domestica MDP0000306572 N 0.937
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.932
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.932
MDP0000194332 Malus x domestica MDP0000194332 N 0.927
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.922
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.908
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.908
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.908
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.908
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.908
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.898
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.893
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.893
mgf007385m Mimulus guttatus mgf007385m N 0.888
mgf004253m Mimulus guttatus mgf004253m N 0.888
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.888
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.885
mgf010551m Mimulus guttatus mgf010551m N 0.883
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.883
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.869
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.868
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.868
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.859
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.859
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.854
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.850
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.845
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.840
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.835
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.830
SB05G026740 Sorghum bicolor Sb05g026740 N 0.830
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.830
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.796
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.796
ppa006486m Prunus persica ppa006486m N 0.791
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.789
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.783
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.777
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.777
MDP0000288579 Malus x domestica MDP0000288579 N 0.772
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.767
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.762
chr6.LjT04E21.260.nc Lotus japonicus chr6.LjT04E21.260.nc N 0.743
e_gw1.98.112.1 Physcomitrella patens e_gw1.98.112.1 N 0.738
BGIOSIBCE035101 Oryza indica BGIOSIBCE035101 N 0.728
mgf009246m Mimulus guttatus mgf009246m N 0.728
gw1.42.85.1 Selaginella moellendorfii gw1.42.85.1 N 0.728