ENSCAFG00000003921 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000003921 T35008_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.769
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.769
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.769
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.748
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000031708 RRM 2 70
ENSCAFP00000031708 RRM 92 160

Links

Other RRM family RBPs
Other Canis familiaris RBPs

154 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.769
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.763
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.759
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.757
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.752
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.752
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.752
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.752
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.752
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.752
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.752
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.752
HNRNPA1 Homo sapiens ENSG00000135486 D 0.752
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.752
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.752
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.752
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.752
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.752
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.752
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.752
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.752
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.752
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.752
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.752
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.752
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.752
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.752
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.752
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.752
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.752
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.752
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.752
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.752
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.752
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.745
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.745
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.745
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.745
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.745
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.745
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.745
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.743
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.740
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.738
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.738
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.738
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.738
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.738
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.738
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.738
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.738
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.736
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.736
LOC100054206 Equus caballus ENSECAG00000006699 I 0.736
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.736
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.732
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.731
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.731
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.731
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.731
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.731
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.731
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.731
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.731
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.731
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.731
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.731
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.730
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.729
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.724
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.724
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.724
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.724
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.724
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.724
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.724
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.722
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.721
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.721
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.721
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.718
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.717
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.717
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.715
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.714
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.714
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.710
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.710
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.710
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.710
LOC785445 Bos taurus ENSBTAG00000025621 I 0.710
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.710
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.710
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.710
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.710
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.708
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.708
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.708
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.707
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.707
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.707
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.707
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.707
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.707
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.707
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.707
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.707
LOC100068539 Equus caballus ENSECAG00000000782 I 0.707
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.707
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.707
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.707
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.707
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.707
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.707
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.707
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.707
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.707
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.707
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.707
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.707
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.707
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.707
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.707
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.707
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.707
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.707
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.707
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.707
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.707
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.707
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.707
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.704
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.704
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.703
AAH72090 Xenopus laevis AAH72090 I 0.703
CBU92546 Xenopus laevis CBU92546 I 0.703
CBF67672 Xenopus laevis CBF67672 I 0.703
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.703
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.703
AAH45260 Xenopus laevis AAH45260 I 0.703
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.703
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.703
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.702
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.702
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.701
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.701
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.700
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.700
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.700
AAA49948 Xenopus laevis AAA49948 I 0.700
AAH46692 Xenopus laevis AAH46692 I 0.700
CBU92450 Xenopus laevis CBU92450 I 0.700
CBF67577 Xenopus laevis CBF67577 I 0.700
P51989 Xenopus laevis P51989 I 0.700