ENSCAFG00000019097 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000019097 T35192_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.782
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.782
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.782
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.769
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000028174 RRM 16 83
ENSCAFP00000028174 RRM 105 174

Links

Other RRM family RBPs
Other Canis familiaris RBPs

141 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.795
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.769
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.767
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.762
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.757
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.757
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.757
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.757
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.757
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.757
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.757
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.757
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.757
HNRNPA1 Homo sapiens ENSG00000135486 D 0.757
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.757
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.757
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.757
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.757
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.757
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.757
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.757
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.757
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.757
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.757
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.757
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.757
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.757
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.757
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.757
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.757
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.757
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.757
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.757
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.757
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.757
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.757
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.750
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.750
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.750
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.750
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.750
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.750
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.750
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.750
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.750
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.750
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.750
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.745
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.743
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.743
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.743
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.743
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.743
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.743
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.743
LOC100054206 Equus caballus ENSECAG00000006699 I 0.741
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.741
LOC785445 Bos taurus ENSBTAG00000025621 I 0.741
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.741
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.736
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.736
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.736
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.736
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.736
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.736
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.736
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.736
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.736
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.736
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.735
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.734
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.734
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.732
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.730
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.730
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.730
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.728
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.728
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.728
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.728
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.728
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.726
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.724
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.724
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.724
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.723
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.723
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.723
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.723
AAH45260 Xenopus laevis AAH45260 I 0.723
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.723
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.723
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.723
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.722
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.721
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.721
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.721
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.721
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.721
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.721
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.717
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.717
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.717
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.716
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.716
P17130 Xenopus laevis P17130 I 0.716
CBU92428 Xenopus laevis CBU92428 I 0.716
AAA49741 Xenopus laevis AAA49741 I 0.716
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.716
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.716
AAA49742 Xenopus laevis AAA49742 I 0.716
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.716
CBF67555 Xenopus laevis CBF67555 I 0.716
CBU92546 Xenopus laevis CBU92546 I 0.716
AAH72090 Xenopus laevis AAH72090 I 0.716
CBF67672 Xenopus laevis CBF67672 I 0.716
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.714
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.714
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.714
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.710
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.709
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.709
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.709
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.709
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.709
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.709
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.707
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.707
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.703
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.703
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.703
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.703
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.703
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.703
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.703
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.703
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.703
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.703
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.701
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.701
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.701