ENSCAFG00000018456 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000018456 T35180_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.812
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.812
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.812
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.792
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000028185 RRM 17 84
ENSCAFP00000028185 RRM 106 176

Links

Other RRM family RBPs
Other Canis familiaris RBPs

163 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.795
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.782
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.775
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.774
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.769
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.769
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.769
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.769
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.769
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.769
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.769
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.769
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.769
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.769
HNRNPA1 Homo sapiens ENSG00000135486 D 0.769
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.769
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.769
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.769
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.769
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.769
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.769
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.769
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.769
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.769
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.769
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.769
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.769
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.769
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.769
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.769
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.769
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.769
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.769
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.769
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.768
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.766
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.762
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.762
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.762
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.762
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.762
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.762
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.762
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.762
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.762
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.762
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.762
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.762
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.761
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.761
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.760
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.760
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.759
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.755
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.755
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.755
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.755
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.755
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.755
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.755
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.755
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.755
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.754
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.754
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.754
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.752
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.748
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.748
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.748
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.748
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.748
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.748
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.748
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.747
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.741
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.741
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.741
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.741
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.740
LOC100054206 Equus caballus ENSECAG00000006699 I 0.740
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.740
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.740
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.739
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.739
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.738
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.738
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.736
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.736
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.735
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.735
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.735
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.735
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.735
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.735
LOC785445 Bos taurus ENSBTAG00000025621 I 0.735
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.735
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.733
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.733
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.733
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.732
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.730
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.729
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.729
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.729
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.728
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.728
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.728
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.728
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.728
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.726
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.726
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.725
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.724
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.724
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.724
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.722
AAH72090 Xenopus laevis AAH72090 I 0.721
AAH45260 Xenopus laevis AAH45260 I 0.721
CBF67672 Xenopus laevis CBF67672 I 0.721
CBU92546 Xenopus laevis CBU92546 I 0.721
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.721
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.721
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.721
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.721
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.721
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.719
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.719
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.718
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.718
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.718
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.717
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.714
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.714
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.714
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.714
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.714
CBF67555 Xenopus laevis CBF67555 I 0.714
AAA49742 Xenopus laevis AAA49742 I 0.714
AAA49741 Xenopus laevis AAA49741 I 0.714
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.714
CBU92428 Xenopus laevis CBU92428 I 0.714
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.714
P17130 Xenopus laevis P17130 I 0.714
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.714
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.713
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.712
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.711
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.707
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.707
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.707
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.706
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.705
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.705
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.705
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.705
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.704
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.702
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.701
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.701
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.701
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.701
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.701
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.701