NCL (Sorex araneus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSARG00000010007 T41346_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.737
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSARP00000009059 RRM 301 369
ENSSARP00000009059 RRM 387 405
ENSSARP00000009059 RRM 480 546
ENSSARP00000009059 RRM 566 628

Links

Other RRM family RBPs
Other Sorex araneus RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.749
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.748
NCL Canis familiaris ENSCAFG00000011037 I 0.744
NCL Bos taurus ENSBTAG00000016174 I 0.741
NCL Gorilla gorilla ENSGGOG00000004300 I 0.737
NCL Macaca mulatta ENSMMUG00000018094 I 0.737
NCL Pan troglodytes ENSPTRG00000013025 I 0.737
NCL Homo sapiens ENSG00000115053 D 0.737
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.737
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.737
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.737
NCL Tarsius syrichta ENSTSYG00000004355 I 0.733
NCL Tursiops truncatus ENSTTRG00000009094 I 0.733
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.733
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.715
NCL Vicugna pacos ENSVPAG00000001796 I 0.713
NCL Microcebus murinus ENSMICG00000002538 I 0.700