NCL (Microcebus murinus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMICG00000002538 T38476_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.959
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMICP00000002317 RRM 301 369
ENSMICP00000002317 RRM 387 452
ENSMICP00000002317 RRM 480 544
ENSMICP00000002317 RRM 564 631

Links

Other RRM family RBPs
Other Microcebus murinus RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCL Macaca mulatta ENSMMUG00000018094 I 0.959
NCL Homo sapiens ENSG00000115053 D 0.959
NCL Pan troglodytes ENSPTRG00000013025 I 0.959
NCL Gorilla gorilla ENSGGOG00000004300 I 0.959
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.956
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.948
NCL Canis familiaris ENSCAFG00000011037 I 0.944
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.944
NCL Tarsius syrichta ENSTSYG00000004355 I 0.944
NCL Bos taurus ENSBTAG00000016174 I 0.941
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.937
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.937
NCL Tursiops truncatus ENSTTRG00000009094 I 0.930
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.922
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.900
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.900
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.893
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.863
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.859
Ncl Mus musculus ENSMUSG00000026234 I 0.859
Ncl Dipodomys ordii ENSDORG00000012513 I 0.837
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.833
NCL Cavia porcellus ENSCPOG00000001034 I 0.830
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.811
NCL Loxodonta africana ENSLAFG00000013061 I 0.800
ENSTBEG00000001546 Tupaia belangeri ENSTBEG00000001546 I 0.793
NCL Macropus eugenii ENSMEUG00000012335 I 0.790
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.790
NCL Vicugna pacos ENSVPAG00000001796 I 0.789
NCL Monodelphis domestica ENSMODG00000002470 I 0.786
ENSTBEG00000002469 Tupaia belangeri ENSTBEG00000002469 I 0.781
NCL Choloepus hoffmanni ENSCHOG00000012860 I 0.730
ENSGGOG00000022986 Gorilla gorilla ENSGGOG00000022986 I 0.706
NCL Sorex araneus ENSSARG00000010007 I 0.700