CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NCL
(
Microcebus murinus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMICG00000002538
T38476_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
NCL
M245_0.6
Homo sapiens
CCGAAAKCCCGAAGYAGG
SELEX
Cook et al.(2011)
1004_8676391
0.959
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMICP00000002317
RRM
301
369
LFIGNLNSNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIK
ENSMICP00000002317
RRM
387
452
LLAKNLPYKVTQDELKEVFEDALEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSIS
ENSMICP00000002317
RRM
480
544
LVLSNLSYSATEETLQEVFEKATLIKVPQNQNGKSKGLRPDFPSFEDKEALNSCNKREIEGRAIR
ENSMICP00000002317
RRM
564
631
LFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT
Links
Other
RRM
family RBPs
Other
Microcebus murinus
RBPs
34 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NCL
Macaca mulatta
ENSMMUG00000018094
I
0.959
NCL
Homo sapiens
ENSG00000115053
D
0.959
NCL
Pan troglodytes
ENSPTRG00000013025
I
0.959
NCL
Gorilla gorilla
ENSGGOG00000004300
I
0.959
LOC100395223
Callithrix jacchus
ENSCJAG00000013538
I
0.956
NCL
Oryctolagus cuniculus
ENSOCUG00000004312
I
0.948
NCL
Canis familiaris
ENSCAFG00000011037
I
0.944
NCL
Pteropus vampyrus
ENSPVAG00000000297
I
0.944
NCL
Tarsius syrichta
ENSTSYG00000004355
I
0.944
NCL
Bos taurus
ENSBTAG00000016174
I
0.941
Q6X9Z0_HORSE
Equus caballus
ENSECAG00000021868
I
0.937
Ame_R005385
Ailuropoda melanoleuca
Ame_R005385
I
0.937
NCL
Tursiops truncatus
ENSTTRG00000009094
I
0.930
ENSBTAG00000026909
Bos taurus
ENSBTAG00000026909
I
0.922
ENSETEG00000014756
Echinops telfairi
ENSETEG00000014756
I
0.900
ENSETEG00000018937
Echinops telfairi
ENSETEG00000018937
I
0.900
NCL
Erinaceus europaeus
ENSEEUG00000005913
I
0.893
Ncl
Rattus norvegicus
ENSRNOG00000018273
I
0.863
ENSRNOG00000008664
Rattus norvegicus
ENSRNOG00000008664
I
0.859
Ncl
Mus musculus
ENSMUSG00000026234
I
0.859
Ncl
Dipodomys ordii
ENSDORG00000012513
I
0.837
ENSPPYG00000013265
Pongo pygmaeus
ENSPPYG00000013265
I
0.833
NCL
Cavia porcellus
ENSCPOG00000001034
I
0.830
ENSSSCG00000016275
Sus scrofa
ENSSSCG00000016275
I
0.811
NCL
Loxodonta africana
ENSLAFG00000013061
I
0.800
ENSTBEG00000001546
Tupaia belangeri
ENSTBEG00000001546
I
0.793
NCL
Macropus eugenii
ENSMEUG00000012335
I
0.790
NCL
Ornithorhynchus anatinus
ENSOANG00000008732
I
0.790
NCL
Vicugna pacos
ENSVPAG00000001796
I
0.789
NCL
Monodelphis domestica
ENSMODG00000002470
I
0.786
ENSTBEG00000002469
Tupaia belangeri
ENSTBEG00000002469
I
0.781
NCL
Choloepus hoffmanni
ENSCHOG00000012860
I
0.730
ENSGGOG00000022986
Gorilla gorilla
ENSGGOG00000022986
I
0.706
NCL
Sorex araneus
ENSSARG00000010007
I
0.700