NCL (Tarsius syrichta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTSYG00000004355 T42433_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.981
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTSYP00000003986 RRM 101 169
ENSTSYP00000003986 RRM 187 252
ENSTSYP00000003986 RRM 280 346
ENSTSYP00000003986 RRM 366 433

Links

Other RRM family RBPs
Other Tarsius syrichta RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCL Macaca mulatta ENSMMUG00000018094 I 0.981
NCL Gorilla gorilla ENSGGOG00000004300 I 0.981
NCL Homo sapiens ENSG00000115053 D 0.981
NCL Pan troglodytes ENSPTRG00000013025 I 0.981
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.978
NCL Canis familiaris ENSCAFG00000011037 I 0.970
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.967
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.967
NCL Bos taurus ENSBTAG00000016174 I 0.963
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.963
NCL Tursiops truncatus ENSTTRG00000009094 I 0.956
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.956
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.944
NCL Microcebus murinus ENSMICG00000002538 I 0.944
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.922
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.907
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.907
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.885
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.881
Ncl Mus musculus ENSMUSG00000026234 I 0.874
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.848
Ncl Dipodomys ordii ENSDORG00000012513 I 0.848
NCL Cavia porcellus ENSCPOG00000001034 I 0.844
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.833
NCL Loxodonta africana ENSLAFG00000013061 I 0.822
NCL Macropus eugenii ENSMEUG00000012335 I 0.819
NCL Monodelphis domestica ENSMODG00000002470 I 0.815
NCL Vicugna pacos ENSVPAG00000001796 I 0.815
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.812
ENSTBEG00000001546 Tupaia belangeri ENSTBEG00000001546 I 0.811
ENSTBEG00000002469 Tupaia belangeri ENSTBEG00000002469 I 0.796
NCL Choloepus hoffmanni ENSCHOG00000012860 I 0.744
NCL Sorex araneus ENSSARG00000010007 I 0.733
ENSGGOG00000022986 Gorilla gorilla ENSGGOG00000022986 I 0.707