XM_002870653.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.7__3369__AT5G40490.1 T44590_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.7__3369__AT5G40490.1 RRM 44 112
fgenesh2_kg.7__3369__AT5G40490.1 RRM 132 202

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT5G40490 Arabidopsis thaliana AT5G40490-TAIR-G N 0.993
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.814
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.807
Cucsa.340040 Cucumis sativus Cucsa.340040 N 0.800
29917.m002004 Ricinus communis 29917.m002004 N 0.793
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.786
PK13311.1 Cannabis sativa PK13311.1 N 0.786
ppa007179m Prunus persica ppa007179m N 0.771
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.764
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.764
mgf016066m Mimulus guttatus mgf016066m N 0.757
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.757
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.757
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.750
MDP0000303054 Malus x domestica MDP0000303054 N 0.743
MDP0000270712 Malus x domestica MDP0000270712 N 0.743
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.721
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.707
29629.m001425 Ricinus communis 29629.m001425 N 0.707
MDP0000202850 Malus x domestica MDP0000202850 N 0.700
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.700