29629.m001425 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 29629.m001425 T48659_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29629.m001425 RRM 21 89
29629.m001425 RRM 109 179

Links

Other RRM family RBPs
Other Ricinus communis RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.943
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.936
GSVIVG00014729001 Vitis vinifera GSVIVG00014729001 N 0.921
cassava24310.valid.m1 Manihot esculenta cassava24310.valid.m1 N 0.914
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.893
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.893
ppa006963m Prunus persica ppa006963m N 0.879
PK22392.1 Cannabis sativa PK22392.1 N 0.879
MDP0000202850 Malus x domestica MDP0000202850 N 0.864
AT3G13224 Arabidopsis thaliana AT3G13224-TAIR-G N 0.857
MDP0000191633 Malus x domestica MDP0000191633 N 0.857
MDP0000220851 Malus x domestica MDP0000220851 N 0.857
XM_002882764.1 Arabidopsis lyrata fgenesh2_kg.3__1405__AT3G13224.1 N 0.843
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.800
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.793
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.793
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.786
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.786
Glyma13g11650.1 Glycine max Glyma13g11650.1 N 0.786
LjSGA_018192.1 Lotus japonicus LjSGA_018192.1 N 0.786
ppa007812m Prunus persica ppa007812m N 0.771
mgf019396m Mimulus guttatus mgf019396m N 0.764
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.764
PDK_20s1363571g001 Phoenix dactylifera PDK_20s1363571g001 N 0.757
GSVIVG00030120001 Vitis vinifera GSVIVG00030120001 N 0.757
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.750
29917.m002004 Ricinus communis 29917.m002004 N 0.750
GRMZM2G050218 Zea mays GRMZM2G050218 N 0.743
MDP0000908645 Malus x domestica MDP0000908645 N 0.743
Cucsa.340040 Cucumis sativus Cucsa.340040 N 0.743
ppa007179m Prunus persica ppa007179m N 0.743
MDP0000288646 Malus x domestica MDP0000288646 N 0.743
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.736
Medtr3g106660 Medicago truncatula Medtr3g106660 N 0.736
PK13311.1 Cannabis sativa PK13311.1 N 0.736
mgf016066m Mimulus guttatus mgf016066m N 0.736
SB03G027920 Sorghum bicolor Sb03g027920 N 0.730
BGIOSIBCE027406 Oryza indica BGIOSIBCE027406 N 0.730
LOC_Os08g23120 Oryza sativa LOC_Os08g23120 N 0.730
MDP0000303054 Malus x domestica MDP0000303054 N 0.721
MDP0000270712 Malus x domestica MDP0000270712 N 0.721
BRADI3G39090 Brachypodium distachyon BRADI3G39090 N 0.721
AT5G40490 Arabidopsis thaliana AT5G40490-TAIR-G N 0.714
BRADI3G20700 Brachypodium distachyon BRADI3G20700 N 0.709
XM_002870653.1 Arabidopsis lyrata fgenesh2_kg.7__3369__AT5G40490.1 N 0.707