B9GI65_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0001s35360 T45437_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s35360.1 RRM 41 109
POPTR_0001s35360.1 RRM 129 199

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29917.m002004 Ricinus communis 29917.m002004 N 0.914
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.907
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.893
PK13311.1 Cannabis sativa PK13311.1 N 0.871
ppa007179m Prunus persica ppa007179m N 0.864
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.857
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.857
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.850
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.850
Cucsa.340040 Cucumis sativus Cucsa.340040 N 0.836
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.829
XM_002870653.1 Arabidopsis lyrata fgenesh2_kg.7__3369__AT5G40490.1 N 0.807
MDP0000303054 Malus x domestica MDP0000303054 N 0.807
MDP0000270712 Malus x domestica MDP0000270712 N 0.807
AT5G40490 Arabidopsis thaliana AT5G40490-TAIR-G N 0.800
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.771
29629.m001425 Ricinus communis 29629.m001425 N 0.750
cassava24310.valid.m1 Manihot esculenta cassava24310.valid.m1 N 0.750
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.750
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.750
mgf016066m Mimulus guttatus mgf016066m N 0.750
POPTR_0017s10590 Populus trichocarpa POPTR_0017s10590 N 0.746
GSVIVG00014729001 Vitis vinifera GSVIVG00014729001 N 0.743
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.736
MDP0000303178 Malus x domestica MDP0000303178 N 0.736
ppa006963m Prunus persica ppa006963m N 0.721
MDP0000202850 Malus x domestica MDP0000202850 N 0.721
MDP0000191633 Malus x domestica MDP0000191633 N 0.721
PK22392.1 Cannabis sativa PK22392.1 N 0.714
AT3G13224 Arabidopsis thaliana AT3G13224-TAIR-G N 0.714
cassava12461.valid.m1 Manihot esculenta cassava12461.valid.m1 N 0.714
MDP0000220851 Malus x domestica MDP0000220851 N 0.714
ppa007812m Prunus persica ppa007812m N 0.714
mgf019396m Mimulus guttatus mgf019396m N 0.707
XM_002882764.1 Arabidopsis lyrata fgenesh2_kg.3__1405__AT3G13224.1 N 0.707
GSVIVG00030120001 Vitis vinifera GSVIVG00030120001 N 0.707
LjSGA_018192.1 Lotus japonicus LjSGA_018192.1 N 0.700
Glyma13g11650.1 Glycine max Glyma13g11650.1 N 0.700