ppa007179m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa007179m T58383_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa007179m RRM 46 114
ppa007179m RRM 134 204

Links

Other RRM family RBPs
Other Prunus persica RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000303054 Malus x domestica MDP0000303054 N 0.907
MDP0000270712 Malus x domestica MDP0000270712 N 0.907
PK13311.1 Cannabis sativa PK13311.1 N 0.900
29917.m002004 Ricinus communis 29917.m002004 N 0.864
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.864
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.857
MDP0000303178 Malus x domestica MDP0000303178 N 0.843
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.836
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.836
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.836
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.829
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.821
Cucsa.340040 Cucumis sativus Cucsa.340040 N 0.821
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.814
mgf016066m Mimulus guttatus mgf016066m N 0.771
AT5G40490 Arabidopsis thaliana AT5G40490-TAIR-G N 0.771
XM_002870653.1 Arabidopsis lyrata fgenesh2_kg.7__3369__AT5G40490.1 N 0.771
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.750
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.750
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.743
MDP0000202850 Malus x domestica MDP0000202850 N 0.743
ppa006963m Prunus persica ppa006963m N 0.743
GSVIVG00014729001 Vitis vinifera GSVIVG00014729001 N 0.743
MDP0000191633 Malus x domestica MDP0000191633 N 0.743
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.743
29629.m001425 Ricinus communis 29629.m001425 N 0.743
MDP0000220851 Malus x domestica MDP0000220851 N 0.736
PK22392.1 Cannabis sativa PK22392.1 N 0.729
ppa007812m Prunus persica ppa007812m N 0.729
AT3G13224 Arabidopsis thaliana AT3G13224-TAIR-G N 0.721
cassava24310.valid.m1 Manihot esculenta cassava24310.valid.m1 N 0.714
XM_002882764.1 Arabidopsis lyrata fgenesh2_kg.3__1405__AT3G13224.1 N 0.707