AT5G40490 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT5G40490-TAIR-G T32831_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT5G40490.1-P RRM 44 112
AT5G40490.1-P RRM 132 202

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002870653.1 Arabidopsis lyrata fgenesh2_kg.7__3369__AT5G40490.1 N 0.993
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.807
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.800
Cucsa.340040 Cucumis sativus Cucsa.340040 N 0.800
29917.m002004 Ricinus communis 29917.m002004 N 0.793
PK13311.1 Cannabis sativa PK13311.1 N 0.786
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.779
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.771
ppa007179m Prunus persica ppa007179m N 0.771
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.771
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.764
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.764
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.757
mgf016066m Mimulus guttatus mgf016066m N 0.757
MDP0000303054 Malus x domestica MDP0000303054 N 0.743
MDP0000270712 Malus x domestica MDP0000270712 N 0.743
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.729
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.714
29629.m001425 Ricinus communis 29629.m001425 N 0.714
MDP0000202850 Malus x domestica MDP0000202850 N 0.707
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.707
cassava24310.valid.m1 Manihot esculenta cassava24310.valid.m1 N 0.700
ppa006963m Prunus persica ppa006963m N 0.700
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.700