Cucsa.340040 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.340040 T49640_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.340040.1 RRM 48 116
Cucsa.340040.1 RRM 136 206
Cucsa.340040.2 RRM 8 76
Cucsa.340040.2 RRM 96 166
Cucsa.340040.3 RRM 1 39
Cucsa.340040.3 RRM 59 129

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK13311.1 Cannabis sativa PK13311.1 N 0.857
29917.m002004 Ricinus communis 29917.m002004 N 0.843
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.836
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.829
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.829
cassava12461.valid.m1 Manihot esculenta cassava12461.valid.m1 N 0.827
ppa007179m Prunus persica ppa007179m N 0.821
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.821
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.814
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.814
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.807
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.807
AT5G40490 Arabidopsis thaliana AT5G40490-TAIR-G N 0.800
XM_002870653.1 Arabidopsis lyrata fgenesh2_kg.7__3369__AT5G40490.1 N 0.800
MDP0000303054 Malus x domestica MDP0000303054 N 0.793
MDP0000270712 Malus x domestica MDP0000270712 N 0.793
mgf016066m Mimulus guttatus mgf016066m N 0.786
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.750
29629.m001425 Ricinus communis 29629.m001425 N 0.743
MDP0000303178 Malus x domestica MDP0000303178 N 0.736
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.736
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.729
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.729
GRMZM2G050218 Zea mays GRMZM2G050218 N 0.729
cassava24310.valid.m1 Manihot esculenta cassava24310.valid.m1 N 0.721
GSVIVG00030120001 Vitis vinifera GSVIVG00030120001 N 0.714
ppa006963m Prunus persica ppa006963m N 0.707
MDP0000191633 Malus x domestica MDP0000191633 N 0.707
MDP0000202850 Malus x domestica MDP0000202850 N 0.707
BRADI3G39090 Brachypodium distachyon BRADI3G39090 N 0.707
GSVIVG00014729001 Vitis vinifera GSVIVG00014729001 N 0.707
ppa007812m Prunus persica ppa007812m N 0.700
mgf019396m Mimulus guttatus mgf019396m N 0.700
MDP0000220851 Malus x domestica MDP0000220851 N 0.700
AT3G13224 Arabidopsis thaliana AT3G13224-TAIR-G N 0.700