Cucsa.240780 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.240780 T49598_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.240780.1 RRM 21 89
Cucsa.240780.1 RRM 109 179

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.900
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.900
GSVIVG00014729001 Vitis vinifera GSVIVG00014729001 N 0.900
29629.m001425 Ricinus communis 29629.m001425 N 0.893
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.886
PK22392.1 Cannabis sativa PK22392.1 N 0.886
cassava24310.valid.m1 Manihot esculenta cassava24310.valid.m1 N 0.879
AT3G13224 Arabidopsis thaliana AT3G13224-TAIR-G N 0.857
ppa006963m Prunus persica ppa006963m N 0.850
MDP0000202850 Malus x domestica MDP0000202850 N 0.843
XM_002882764.1 Arabidopsis lyrata fgenesh2_kg.3__1405__AT3G13224.1 N 0.843
MDP0000191633 Malus x domestica MDP0000191633 N 0.836
MDP0000220851 Malus x domestica MDP0000220851 N 0.836
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.786
Glyma13g11650.1 Glycine max Glyma13g11650.1 N 0.786
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.779
LjSGA_018192.1 Lotus japonicus LjSGA_018192.1 N 0.779
ppa007812m Prunus persica ppa007812m N 0.771
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.771
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.771
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.771
mgf019396m Mimulus guttatus mgf019396m N 0.757
29917.m002004 Ricinus communis 29917.m002004 N 0.750
PK13311.1 Cannabis sativa PK13311.1 N 0.750
GSVIVG00030120001 Vitis vinifera GSVIVG00030120001 N 0.750
ppa007179m Prunus persica ppa007179m N 0.743
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.743
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.736
PDK_20s1363571g001 Phoenix dactylifera PDK_20s1363571g001 N 0.736
BGIOSIBCE027406 Oryza indica BGIOSIBCE027406 N 0.730
LOC_Os08g23120 Oryza sativa LOC_Os08g23120 N 0.730
SB03G027920 Sorghum bicolor Sb03g027920 N 0.730
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.729
Medtr3g106660 Medicago truncatula Medtr3g106660 N 0.729
MDP0000288646 Malus x domestica MDP0000288646 N 0.729
GRMZM2G050218 Zea mays GRMZM2G050218 N 0.729
Cucsa.340040 Cucumis sativus Cucsa.340040 N 0.729
MDP0000908645 Malus x domestica MDP0000908645 N 0.729
mgf016066m Mimulus guttatus mgf016066m N 0.714
MDP0000303054 Malus x domestica MDP0000303054 N 0.714
AT5G40490 Arabidopsis thaliana AT5G40490-TAIR-G N 0.714
MDP0000270712 Malus x domestica MDP0000270712 N 0.714
BRADI3G39090 Brachypodium distachyon BRADI3G39090 N 0.714
BRADI3G20700 Brachypodium distachyon BRADI3G20700 N 0.709
XM_002870653.1 Arabidopsis lyrata fgenesh2_kg.7__3369__AT5G40490.1 N 0.707