cassava7031.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava7031.valid.m1 T49461_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava7031.valid.m1 RRM 21 89
cassava7031.valid.m1 RRM 109 179

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29629.m001425 Ricinus communis 29629.m001425 N 0.943
GSVIVG00014729001 Vitis vinifera GSVIVG00014729001 N 0.936
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.936
cassava24310.valid.m1 Manihot esculenta cassava24310.valid.m1 N 0.929
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.900
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.893
PK22392.1 Cannabis sativa PK22392.1 N 0.886
ppa006963m Prunus persica ppa006963m N 0.886
MDP0000191633 Malus x domestica MDP0000191633 N 0.879
MDP0000220851 Malus x domestica MDP0000220851 N 0.879
MDP0000202850 Malus x domestica MDP0000202850 N 0.871
XM_002882764.1 Arabidopsis lyrata fgenesh2_kg.3__1405__AT3G13224.1 N 0.857
AT3G13224 Arabidopsis thaliana AT3G13224-TAIR-G N 0.857
LjSGA_018192.1 Lotus japonicus LjSGA_018192.1 N 0.814
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.814
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.807
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.800
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.800
mgf019396m Mimulus guttatus mgf019396m N 0.800
Glyma13g11650.1 Glycine max Glyma13g11650.1 N 0.800
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.793
GSVIVG00030120001 Vitis vinifera GSVIVG00030120001 N 0.793
ppa007812m Prunus persica ppa007812m N 0.786
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.786
PDK_20s1363571g001 Phoenix dactylifera PDK_20s1363571g001 N 0.786
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.771
29917.m002004 Ricinus communis 29917.m002004 N 0.764
SB03G027920 Sorghum bicolor Sb03g027920 N 0.752
Cucsa.340040 Cucumis sativus Cucsa.340040 N 0.750
PK13311.1 Cannabis sativa PK13311.1 N 0.750
ppa007179m Prunus persica ppa007179m N 0.750
LOC_Os08g23120 Oryza sativa LOC_Os08g23120 N 0.745
BGIOSIBCE027406 Oryza indica BGIOSIBCE027406 N 0.745
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.743
MDP0000288646 Malus x domestica MDP0000288646 N 0.743
MDP0000908645 Malus x domestica MDP0000908645 N 0.743
Medtr3g106660 Medicago truncatula Medtr3g106660 N 0.736
AT5G40490 Arabidopsis thaliana AT5G40490-TAIR-G N 0.729
GRMZM2G050218 Zea mays GRMZM2G050218 N 0.729
PDK_20s1371981g001 Phoenix dactylifera PDK_20s1371981g001 N 0.722
XM_002870653.1 Arabidopsis lyrata fgenesh2_kg.7__3369__AT5G40490.1 N 0.721
MDP0000270712 Malus x domestica MDP0000270712 N 0.721
MDP0000303054 Malus x domestica MDP0000303054 N 0.721
BRADI3G20700 Brachypodium distachyon BRADI3G20700 N 0.716
mgf016066m Mimulus guttatus mgf016066m N 0.714
BRADI3G39090 Brachypodium distachyon BRADI3G39090 N 0.707