cassava897.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava897.valid.m1 T49485_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava897.valid.m1 RRM 29 97
cassava897.valid.m1 RRM 117 187

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29917.m002004 Ricinus communis 29917.m002004 N 0.907
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.907
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.864
PK13311.1 Cannabis sativa PK13311.1 N 0.850
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.843
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.843
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.836
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.836
Cucsa.340040 Cucumis sativus Cucsa.340040 N 0.829
ppa007179m Prunus persica ppa007179m N 0.829
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.814
XM_002870653.1 Arabidopsis lyrata fgenesh2_kg.7__3369__AT5G40490.1 N 0.814
AT5G40490 Arabidopsis thaliana AT5G40490-TAIR-G N 0.807
MDP0000303054 Malus x domestica MDP0000303054 N 0.793
MDP0000270712 Malus x domestica MDP0000270712 N 0.793
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.786
GSVIVG00014729001 Vitis vinifera GSVIVG00014729001 N 0.764
MDP0000202850 Malus x domestica MDP0000202850 N 0.764
cassava24310.valid.m1 Manihot esculenta cassava24310.valid.m1 N 0.764
29629.m001425 Ricinus communis 29629.m001425 N 0.764
mgf016066m Mimulus guttatus mgf016066m N 0.757
AT3G13224 Arabidopsis thaliana AT3G13224-TAIR-G N 0.757
MDP0000191633 Malus x domestica MDP0000191633 N 0.757
ppa006963m Prunus persica ppa006963m N 0.757
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.750
PK22392.1 Cannabis sativa PK22392.1 N 0.750
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.750
MDP0000220851 Malus x domestica MDP0000220851 N 0.750
cassava12461.valid.m1 Manihot esculenta cassava12461.valid.m1 N 0.743
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.743
XM_002882764.1 Arabidopsis lyrata fgenesh2_kg.3__1405__AT3G13224.1 N 0.743
Glyma13g11650.1 Glycine max Glyma13g11650.1 N 0.743
mgf019396m Mimulus guttatus mgf019396m N 0.736
LjSGA_018192.1 Lotus japonicus LjSGA_018192.1 N 0.736
Medtr3g106660 Medicago truncatula Medtr3g106660 N 0.729
GSVIVG00030120001 Vitis vinifera GSVIVG00030120001 N 0.721
GRMZM2G050218 Zea mays GRMZM2G050218 N 0.721
MDP0000303178 Malus x domestica MDP0000303178 N 0.721
ppa007812m Prunus persica ppa007812m N 0.714
PDK_20s1363571g001 Phoenix dactylifera PDK_20s1363571g001 N 0.707