MDP0000202850 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000202850 T57426_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000202850 RRM 21 89
MDP0000202850 RRM 109 179

Links

Other RRM family RBPs
Other Malus x domestica RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000191633 Malus x domestica MDP0000191633 N 0.964
MDP0000220851 Malus x domestica MDP0000220851 N 0.964
ppa006963m Prunus persica ppa006963m N 0.950
PK22392.1 Cannabis sativa PK22392.1 N 0.879
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.871
GSVIVG00014729001 Vitis vinifera GSVIVG00014729001 N 0.871
29629.m001425 Ricinus communis 29629.m001425 N 0.864
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.864
cassava24310.valid.m1 Manihot esculenta cassava24310.valid.m1 N 0.857
AT3G13224 Arabidopsis thaliana AT3G13224-TAIR-G N 0.857
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.843
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.843
XM_002882764.1 Arabidopsis lyrata fgenesh2_kg.3__1405__AT3G13224.1 N 0.843
Glyma13g11650.1 Glycine max Glyma13g11650.1 N 0.814
mgf019396m Mimulus guttatus mgf019396m N 0.814
LjSGA_018192.1 Lotus japonicus LjSGA_018192.1 N 0.800
ppa007812m Prunus persica ppa007812m N 0.793
GSVIVG00030120001 Vitis vinifera GSVIVG00030120001 N 0.786
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.771
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.764
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.764
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.764
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.764
LOC_Os08g23120 Oryza sativa LOC_Os08g23120 N 0.759
BGIOSIBCE027406 Oryza indica BGIOSIBCE027406 N 0.759
MDP0000908645 Malus x domestica MDP0000908645 N 0.757
Medtr3g106660 Medicago truncatula Medtr3g106660 N 0.757
MDP0000288646 Malus x domestica MDP0000288646 N 0.757
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.757
ppa007179m Prunus persica ppa007179m N 0.743
PDK_20s1363571g001 Phoenix dactylifera PDK_20s1363571g001 N 0.743
PK13311.1 Cannabis sativa PK13311.1 N 0.729
29917.m002004 Ricinus communis 29917.m002004 N 0.729
SB03G027920 Sorghum bicolor Sb03g027920 N 0.723
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.721
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.721
GRMZM2G050218 Zea mays GRMZM2G050218 N 0.721
MDP0000303054 Malus x domestica MDP0000303054 N 0.714
MDP0000270712 Malus x domestica MDP0000270712 N 0.714
mgf016066m Mimulus guttatus mgf016066m N 0.707
AT5G40490 Arabidopsis thaliana AT5G40490-TAIR-G N 0.707
Cucsa.340040 Cucumis sativus Cucsa.340040 N 0.707
XM_002870653.1 Arabidopsis lyrata fgenesh2_kg.7__3369__AT5G40490.1 N 0.700
BRADI3G39090 Brachypodium distachyon BRADI3G39090 N 0.700