A9PDC5_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0015s00790 T45663_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0015s00790.1 RRM 30 97

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.779
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.779
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.779
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.779
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.765
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.765
30076.m004440 Ricinus communis 30076.m004440 I 0.765
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.765
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.765
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.765
MDP0000488395 Malus x domestica MDP0000488395 I 0.750
MDP0000744398 Malus x domestica MDP0000744398 I 0.750
MDP0000548950 Malus x domestica MDP0000548950 I 0.750
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.750
PK14266.1 Cannabis sativa PK14266.1 I 0.750
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.750
MDP0000857317 Malus x domestica MDP0000857317 I 0.739
MDP0000118777 Malus x domestica MDP0000118777 I 0.739
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.735
ppa016222m Prunus persica ppa016222m I 0.735
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.735
ppa018603m Prunus persica ppa018603m I 0.725
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.725
PK17691.1 Cannabis sativa PK17691.1 N 0.721
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.710
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.710
MDP0000134468 Malus x domestica MDP0000134468 I 0.706
ppa009964m Prunus persica ppa009964m I 0.706