AT2G46780 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT2G46780-TAIR-G T32715_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AT2G46780.1-P RRM 24 92

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.986
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.913
MDP0000548950 Malus x domestica MDP0000548950 I 0.899
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.899
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.899
MDP0000744398 Malus x domestica MDP0000744398 I 0.899
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.899
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.899
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.899
30076.m004440 Ricinus communis 30076.m004440 I 0.899
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.899
ppa016222m Prunus persica ppa016222m I 0.899
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.884
MDP0000488395 Malus x domestica MDP0000488395 I 0.884
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.870
PK14266.1 Cannabis sativa PK14266.1 I 0.870
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.870
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.870
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.855
ppa018603m Prunus persica ppa018603m I 0.841
MDP0000118777 Malus x domestica MDP0000118777 I 0.812
MDP0000857317 Malus x domestica MDP0000857317 I 0.812
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.797
ppa009716m Prunus persica ppa009716m I 0.797
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.797
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.783
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.783
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.783
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.783
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.783
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.783
mgf017214m Mimulus guttatus mgf017214m I 0.768
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.768
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.768
ppa018926m Prunus persica ppa018926m I 0.768
PK15672.1 Cannabis sativa PK15672.1 I 0.768
ppa019392m Prunus persica ppa019392m I 0.768
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.754
MDP0000138486 Malus x domestica MDP0000138486 I 0.754
MDP0000134468 Malus x domestica MDP0000134468 I 0.754
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.754
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.754
PK21213.1 Cannabis sativa PK21213.1 I 0.754
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.754
ppa009964m Prunus persica ppa009964m I 0.754
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.754
MDP0000284454 Malus x domestica MDP0000284454 I 0.754
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.754
MDP0000184420 Malus x domestica MDP0000184420 I 0.739
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.739
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.739
CU179634_3 Medicago truncatula CU179634_3 I 0.739
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.739
MDP0000233609 Malus x domestica MDP0000233609 I 0.725
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.725
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.725
29983.m003293 Ricinus communis 29983.m003293 I 0.725
29908.m006046 Ricinus communis 29908.m006046 I 0.725
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.725
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.725
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.725
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.725
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.725
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.725
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.725
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.725
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.725
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.710
PK17691.1 Cannabis sativa PK17691.1 N 0.710
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.710
30170.m013735 Ricinus communis 30170.m013735 I 0.710
A9PDC5_POPTR Populus trichocarpa POPTR_0015s00790 N 0.710
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.710
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.710
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.710
MDP0000271231 Malus x domestica MDP0000271231 N 0.710
MDP0000181802 Malus x domestica MDP0000181802 N 0.710
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.710
ppa009564m Prunus persica ppa009564m I 0.710