ppa018603m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa018603m T58479_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ppa018603m RRM 31 99

Links

Other RRM family RBPs
Other Prunus persica RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000857317 Malus x domestica MDP0000857317 I 0.899
MDP0000118777 Malus x domestica MDP0000118777 I 0.899
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.870
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.870
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.870
30076.m004440 Ricinus communis 30076.m004440 I 0.870
PK14266.1 Cannabis sativa PK14266.1 I 0.870
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.855
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.855
MDP0000744398 Malus x domestica MDP0000744398 I 0.855
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.855
MDP0000548950 Malus x domestica MDP0000548950 I 0.855
MDP0000488395 Malus x domestica MDP0000488395 I 0.855
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.855
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.855
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.841
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.841
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.841
ppa016222m Prunus persica ppa016222m I 0.841
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.841
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.826
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.826
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.797
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.783
mgf017214m Mimulus guttatus mgf017214m I 0.783
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.783
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.783
ppa009716m Prunus persica ppa009716m I 0.783
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.768
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.768
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.768
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.768
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.768
MDP0000138486 Malus x domestica MDP0000138486 I 0.768
PK15672.1 Cannabis sativa PK15672.1 I 0.768
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.768
PK21213.1 Cannabis sativa PK21213.1 I 0.768
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.768
ppa009964m Prunus persica ppa009964m I 0.768
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.768
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.768
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.754
CU179634_3 Medicago truncatula CU179634_3 I 0.754
ppa019392m Prunus persica ppa019392m I 0.739
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.739
MDP0000134468 Malus x domestica MDP0000134468 I 0.739
PK17691.1 Cannabis sativa PK17691.1 N 0.739
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.739
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.739
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.739
MDP0000284454 Malus x domestica MDP0000284454 I 0.739
ppa018926m Prunus persica ppa018926m I 0.739
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.739
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.725
A9PDC5_POPTR Populus trichocarpa POPTR_0015s00790 N 0.725
MDP0000184420 Malus x domestica MDP0000184420 I 0.725
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.725
30170.m013735 Ricinus communis 30170.m013735 I 0.725
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.725
MDP0000233609 Malus x domestica MDP0000233609 I 0.725
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.710
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.710
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.710
29908.m006046 Ricinus communis 29908.m006046 I 0.710
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.710
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.710
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.710
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.710
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.710
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.710